Publications
Laurence D Parnell, Pierre Lindenbaum, Khader Shameer, Giovanni Marco Dall’Olio, Daniel C Swan, Lars Juhl Jensen, Simon J Cockell, Brent S Pedersen, Mary E. Mangan, Christopher A. Miller, Istvan Albert. BioStar: An Online Question and Answer Resource for the Bioinformatics Community. (2011) PLoS Comput Biol 7(10): e1002216. doi: 10.1371/journal.pcbi.1002216 
Stadler L, Hoffmann T, Tomlinson D, Song Q, Lee T, Busby M, Nyathi Y, Gendra E, Tiede C, Flanagan K, Cockell SJ, Wipat A, Harwood C, Wagner S, Knowles M, Davis J, Ko Ferrigno P. Structure-function studies of an engineered scaffold protein derived from Stefin A. II: Development and Applications of the SQT variant (2011) Protein Engineering Design and Selection 24(9): 751-63 doi: 10.1093/protein/gzr019
Weile J, Pocock M, Cockell SJ, Lord P, Dewar JM, Holstein E, Wilkinson D, Lydall D, Hallinan J, Wipat A. Customisable views on semantically integrated networks for systems biology (2011) Bioinformatics 27(9): 1299-306 PubMed
Simon J Cockell, Jochen Weile, Phillip Lord, Claire Wipat, Dmytro Andriychenko, Matthew Pocock, Darren Wilkinson, Malcolm Young and Anil Wipat (2010) An integrated dataset for in silico drug discovery. Journal of Integrative Bioinformatics 7(3):116. PubMed
Christine Hoogland, Martin O’Gorman, Philippe Bogard, Frank Gibson, Matthias Berth, Simon J Cockell, Andreas Ekefjärd, Ola Forsstrom-Olsson, Anna Kapferer, Mattias Nilsson, Salvador Martínez-Bartolomé, Juan Pablo Albar, Sira Echevarría-Zomeño, Montserrat Martínez-Gomariz, Johann Joets, Pierre-Alain Binz, Chris F Taylor, Andrew Dowsey, Andrew R Jones. (2010) Guidelines for reporting the use of gel image informatics in proteomics. Nature Biotechnology 28:655-6 PubMed.
Kaveh Emami, Nicholas J. Morris, Simon J. Cockell, Gabriela Golebiowska, Qing-Yao Shu, Angharad M.R. Gatehouse (2010) Changes in Protein Expression Profiles Between a Low Phytic Acid Rice (Oryza sativa L. ssp. japonica) Line and its Parental Line: A Proteomic and Bioinformatic Approach. Journal of Agricultural and Food Chemistry 58(11):6912-22 PubMed
S.J. Cockell, B. Oliva, and R. M. Jackson. (2007) Evaluating in silico predictions of protein-protein interactions using Comparative Docking Bioinformatics 23, 573-581 Pubmed
Conferences
Andra Waagmeester, Gareth Palidwor, Pawel Szczesny, Istvan Albert, Mary Mangan, Christopher A Miller, Simon J Cockell, Pierre Lindenbaum, Daniel Silvestre, Giovanni Marco Dall’Olio and Chris Evelo. Acknowledging contributions to online expert assistance. Altmetrics11.
Simon J Cockell, Jochen Weile, Phillip Lord, Claire Wipat, Dmytro Andriychenko, Matthew Pocock, Darren Wilkinson, Malcolm Young and Anil Wipat. An Ondex dataset for in silico drug discovery. Poster at 4th Annual BBSRC Systems Biology Grant Holders’ Workshop, Edinburgh, UK.
Catherine Canevet, Keywan Hassani-Pak, Simon J Cockell and Matthew Pocock. ONDEX – Data Integration and Visualisation. Workshop at BioSysBio 2009, Cambridge, UK.
Simon J Cockell, Matthew Pocock, Catherine Canevet, James Dewar, Eva Holstein, Steve Addinall, Phillip Lord, David Lydall, Darren Wilkindon and Anil Wipat.Exploring Yeast Telomere Maintenance Using Ondex. Poster at 3rd Annual BBSRC Systems Biology Grant Holders’ Workshop, Nottingham, UK.